bioToolKit
Bioinformatics Toolkit: R/Python3/shell/js/C/C++
QQ group: 187923577

Tools

Web Tools Powered by JavaScript.

Navigator Short cuts for bioinformatics from BioMooc.
TransPhage A tool for Translating peptide from phage display[Ph.Dc7c,Ph.D7,Ph.D12].
revCom A tool for DNA translation, reverse complement.
LaTeX Math Preview to preview LaTeX Math expression, based on MathJax.js
Amino Acid Formater Format amino acid sequence to patent style
todos VUE3::todos
colors Viewer View a list of colors in hex format.

Local Server Powered by JavaScript.

Code Reader to preview R or Python code on server with some highlight by prism.js.
Markdown Reader to view Markdown files using js only. For Rstudio
Figure Gallery to view figures(jpg/png/...) on server using js and json only.
TocNavigator.js get Top of Contents of a long web page.
carousel Rotations of pictures.

Linux Tools

Docker images of Rstudio with Seurat, Monocle, ...
DaisyHttp can be used as Data Center Server for Bio Big Files (bam, fasta, ...), with CORS and range header enabled.

Note System

txtBlog.py for reading and organizing txt/Markdown/html files at localhost Powered by Python3.6
StackNote for writing and reading memos of papar in Markdown at localhost Powered by JavaScript/Vue3

Dataset

gene list

mito_by_nucleus.txt: human 细胞核编码的线粒体基因，共 1049 个 (PMID 32299104 table S2)
TF_list.gene.txt: human 转录因子列表(PMID 19274049)
MSigDB Collections The 25724 gene sets in the Molecular Signatures Database (MSigDB) are divided into 8 major collections, and several sub-collections.

Impact factor: 期刊分区表(官网)

Visualization

R, ggplot2; matplotlib, seaborn, js,

learn ggplot2

Fancy pictures driven by data: