cc.genes2 = list( G1_S=c("ACD","ACYP1","ADAMTS1","ANKRD10","APEX2","ARGLU1","ATAD2","BARD1","BRD7","C1orf63","C7orf41","C14orf142","CAPN7","CASP2","CASP8AP2","CCNE1","CCNE2","CDC6","CDC25A","CDCA7","CDCA7L","CEP57","CHAF1A","CHAF1B","CLSPN","CREBZF","CTSD","DIS3","DNAJC3","DONSON","DSCC1","DTL","E2F1","EIF2A","ESD","FAM105B","FAM122A","FLAD1","GINS2","GINS3","GMNN","HELLS","HOXB4","HRAS","HSF2","INSR","INTS8","IVNS1ABP","KIAA1147","KIAA1586","LNPEP","LUC7L3","MCM2","MCM4","MCM5","MCM6","MDM1","MED31","MRI1","MSH2","NASP","NEAT1","NKTR","NPAT","NUP43","ORC1","OSBPL6","PANK2","PCDH7","PCNA","PLCXD1","PMS1","PNN","POLD3","RAB23","RECQL4","RMI2","RNF113A","RNPC3","SEC62","SKP2","SLBP","SLC25A36","SNHG10","SRSF7","SSR3","TAF15","TIPIN","TOPBP1","TRA2A","TTC14","UBR7","UHRF1","UNG","USP53","VPS72","WDR76","ZMYND19","ZNF367","ZRANB2"), S=c("ABCC5","ABHD10","ANKRD18A","ASF1B","ATAD2","BBS2","BIVM","BLM","BMI1","BRCA1","BRIP1","C5orf42","C11orf82","CALD1","CALM2","CASP2","CCDC14","CCDC84","CCDC150","CDC7","CDC45","CDCA5","CDKN2AIP","CENPM","CENPQ","CERS6","CHML","COQ9","CPNE8","CREBZF","CRLS1","DCAF16","DEPDC7","DHFR","DNA2","DNAJB4","DONSON","DSCC1","DYNC1LI2","E2F8","EIF4EBP2","ENOSF1","ESCO2","EXO1","EZH2","FAM178A","FANCA","FANCI","FEN1","GCLM","GOLGA8A","GOLGA8B","H1F0","HELLS","HIST1H2AC","HIST1H4C","INTS7","KAT2A","KAT2B","KDELC1","KIAA1598","LMO4","LYRM7","MAN1A2","MAP3K2","MASTL","MBD4","MCM8","MLF1IP","MYCBP2","NAB1","NEAT1","NFE2L2","NRD1","NSUN3","NT5DC1","NUP160","OGT","ORC3","OSGIN2","PHIP","PHTF1","PHTF2","PKMYT1","POLA1","PRIM1","PTAR1","RAD18","RAD51","RAD51AP1","RBBP8","REEP1","RFC2","RHOBTB3","RMI1","RPA2","RRM1","RRM2","RSRC2","SAP30BP","SLC38A2","SP1","SRSF5","SVIP","TOP2A","TTC31","TTLL7","TYMS","UBE2T","UBL3","USP1","ZBED5","ZWINT"), G2_M=c("ANLN","AP3D1","ARHGAP19","ARL4A","ARMC1","ASXL1","ATL2","AURKB","BCLAF1","BORA","BRD8","BUB3","C2orf69","C14orf80","CASP3","CBX5","CCDC107","CCNA2","CCNF","CDC16","CDC25C","CDCA2","CDCA3","CDCA8","CDK1","CDKN1B","CDKN2C","CDR2","CENPL","CEP350","CFD","CFLAR","CHEK2","CKAP2","CKAP2L","CYTH2","DCAF7","DHX8","DNAJB1","ENTPD5","ESPL1","FADD","FAM83D","FAN1","FANCD2","G2E3","GABPB1","GAS1","GAS2L3","H2AFX","HAUS8","HINT3","HIPK2","HJURP","HMGB2","HN1","HP1BP3","HRSP12","IFNAR1","IQGAP3","KATNA1","KCTD9","KDM4A","KIAA1524","KIF5B","KIF11","KIF20B","KIF22","KIF23","KIFC1","KLF6","KPNA2","LBR","LIX1L","LMNB1","MAD2L1","MALAT1","MELK","MGAT2","MID1","MIS18BP1","MND1","NCAPD3","NCAPH","NCOA5","NDC80","NEIL3","NFIC","NIPBL","NMB","NR3C1","NUCKS1","NUMA1","NUSAP1","PIF1","PKNOX1","POLQ","PPP1R2","PSMD11","PSRC1","RANGAP1","RCCD1","RDH11","RNF141","SAP30","SKA3","SMC4","STAT1","STIL","STK17B","SUCLG2","TFAP2A","TIMP1","TMEM99","TMPO","TNPO2","TOP2A","TRAIP","TRIM59","TRMT2A","TTF2","TUBA1A","TUBB","TUBB2A","TUBB4B","TUBD1","UACA","UBE2C","VPS25","VTA1","WSB1","ZNF587","ZNHIT2"), M=c("AHI1","AKIRIN2","ANKRD40","ANLN","ANP32B","ANP32E","ARHGAP19","ARL6IP1","ASXL1","ATF7IP","AURKA","BIRC2","BIRC5","BUB1","CADM1","CCDC88A","CCDC90B","CCNA2","CCNB2","CDC20","CDC25B","CDC27","CDC42EP1","CDCA3","CENPA","CENPE","CENPF","CEP55","CFLAR","CIT","CKAP2","CKAP5","CKS1B","CKS2","CNOT10","CNTROB","CTCF","CTNNA1","CTNND1","DEPDC1","DEPDC1B","DIAPH3","DLGAP5","DNAJA1","DNAJB1","DR1","DZIP3","E2F5","ECT2","FAM64A","FOXM1","FYN","G2E3","GADD45A","GAS2L3","GOT1","GRK6","GTSE1","HCFC1","HMG20B","HMGB3","HMMR","HN1","HP1BP3","HPS4","HS2ST1","HSPA8","HSPA13","INADL","KIF2C","KIF5B","KIF14","KIF20B","KLF9","LBR","LMNA","MCM4","MDC1","MIS18BP1","MKI67","MLLT4","MZT1","NCAPD2","NCOA5","NEK2","NUF2","NUP35","NUP98","NUSAP1","ODF2","ORAOV1","PBK","PCF11","PLK1","POC1A","POM121","PPP1R10","PRPSAP1","PRR11","PSMG3","PTP4A1","PTPN9","PWP1","QRICH1","RAD51C","RANGAP1","RBM8A","RCAN1","RERE","RNF126","RNF141","RNPS1","RRP1","SEPHS1","SETD8","SFPQ","SGOL2","SHCBP1","SMARCB1","SMARCD1","SPAG5","SPTBN1","SRF","SRSF3","SS18","SUV420H1","TACC3","THRAP3","TLE3","TMEM138","TNPO1","TOMM34","TPX2","TRIP13","TSG101","TSN","TTK","TUBB4B","TXNDC9","TXNRD1","UBE2D3","USP13","USP16","VANGL1","WIBG","WSB1","YWHAH","ZC3HC1","ZFX","ZMYM1","ZNF207"), M_G1=c("AGFG1","AGPAT3","AKAP13","AMD1","ANP32E","ANTXR1","BAG3","BTBD3","CBX3","CDC42","CDK7","CDKN3","CEP70","CNIH4","CTR9","CWC15","DCP1A","DCTN6","DEXI","DKC1","DNAJB6","DSP","DYNLL1","EIF4E","ELP3","FAM60A","FAM189B","FOPNL","FOXK2","FXR1","G3BP1","GATA2","GNB1","GRPEL1","GSPT1","GTF3C4","HIF1A","HMG20B","HMGCR","HSD17B11","HSPA8","ILF2","JMJD1C","KDM5B","KIAA0586","KIF5B","KPNB1","KRAS","LARP1","LARP7","LRIF1","LYAR","MORF4L2","MRPL19","MRPS2","MRPS18B","MSL1","MTPN","NCOA3","NFIA","NFIC","NUCKS1","NUFIP2","NUP37","ODF2","OPN3","PAK1IP1","PBK","PCF11","PLIN3","PPP2CA","PPP2R2A","PPP6R3","PRC1","PSEN1","PTMS","PTTG1","RAD21","RAN","RHEB","RPL13A","SLC39A10","SNUPN","SRSF3","STAG1","SYNCRIP","TAF9","TCERG1","TLE3","TMEM138","TOB2","TOP1","TROAP","TSC22D1","TULP4","UBE2D3","VANGL1","VCL","WIPF2","WWC1","YY1","ZBTB7A","ZCCHC10","ZNF24","ZNF281","ZNF593") ) > sapply(cc.genes2, length) G1_S S G2_M M M_G1 100 113 133 151 106 #should rm _ in list names;